Gravitational molecules at minimum shape complexity
Critical points of VS = √Icm × W on the pre-shape sphere. Heavy particles red, light particles blue. 3D positions projected via PCA. N = 100 to 10,000.
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Shell structure strengthens with N.





2D + 3D, 5 mass ratios





5 mass ratios





5 mass ratios





5 mass ratios





5 mass ratios





500 starts, angle distributions, recurring motifs





Jupiter/Saturn-like flattening





Maria’s 3-body triangle vorticity





Bifurcation, structural persistence, bond angles across mass ratios





| Config | Equal | 1:2 | 1:10 | 1:80 | 1:2000 |
|---|---|---|---|---|---|
| N=100, 2D | 52,231 | 142,784 | 3.6×106 | 5.1×108 | 1.6×1012 |
| N=100, 3D | 43,325 | 118,835 | 3.0×106 | 4.3×108 | 1.3×1012 |
| N=500 | 2.5×106 | 7.0×106 | 1.8×108 | 2.6×1010 | 7.9×1013 |
| N=1,000 | 1.4×107 | 4.0×107 | 1.0×109 | 1.5×1011 | 4.5×1014 |
| N=2,000 | 8.2×107 | 2.3×108 | 5.8×109 | 8.6×1011 | 2.6×1015 |
| N=5,000 | 8.2×108 | 2.3×109 | 5.8×1010 | 8.5×1012 | 2.6×1016 |
| N=10,000 | 4.6×109 | — | — | — | 1.5×1017 |
2D results reproduce Maria’s methodology. 3D results projected via PCA.










Molecular segregation persists at scale.





Mass-dependent shell structure clearly visible.





Shell structure increasingly pronounced.





Five thousand particles. Clear mass-dependent spatial organisation.





z-variance penalty breaks spherical symmetry → Jupiter/Saturn-like shapes. N=200, 3D, aligned to principal axes.








3-body oriented triangle terms: VEM = √I × (α Welec + β Wmag). The magnetic term couples triangle areas to a global vorticity axis — oblate shapes from pure geometry.
Full explainer: mechanism, how to read the figures, what is shown vs open →








500 random starts per mass ratio, keeping all local minima. For each converged configuration we measure the nearest-neighbour bond angle: for every particle, find its two closest neighbours and measure the angle at the vertex.
The “bond angle” here is a packing statistic, not a chemical bond. It answers: when 100 points settle to minimum shape complexity under the gravitational potential, how are they locally arranged? The nearest-neighbour angle is determined by how particles pack in 3D under the constraint of the pre-shape sphere. We mark water’s 104.5° and the ideal tetrahedral angle 109.5° as reference lines — not because we expect to recover water from gravity, but because both are signatures of the same underlying geometry: optimal packing of repulsive points in three dimensions.
All 500 starts converge to the same minimum — the landscape has a single basin. The mean bond angle is 107.9°, close to the ideal tetrahedral angle (109.5°). This is expected: 100 equal-mass particles minimising ∑ 1/rij on a sphere is essentially the Thomson packing problem, whose local structure is approximately tetrahedral. The proximity to water’s 104.5° is a consequence of shared packing geometry, not a claim about chemistry.


Still a single basin. Introducing mass asymmetry shifts the packing: heavy particles claim more “space” in the potential (their mimj/r terms dominate), compressing the angles of lighter particles’ local neighbourhoods. Two light-particle clusters emerge.


The landscape bifurcates — 3 distinct minima from 500 starts. The dominant minimum (434/500 starts) has 7 light-particle clusters and a mean angle of 86.6°. Two rarer configurations exist at slightly higher complexity. The angle compression continues: heavy particles force light particles into tighter local arrangements.


Two distinct minima. The dominant (447/500 starts) has a mean angle of 71.4° — well below tetrahedral, reflecting the extreme mass asymmetry. At this ratio (comparable to proton/electron), heavy particles form a rigid scaffold and light particles are confined to tight clusters in the interstices, compressing local angles far below the equal-mass packing value.


| Mass Ratio | Distinct Minima | Dominant Angle | Light Clusters |
|---|---|---|---|
| Equal | 1 | 107.9° | — |
| 1:10 | 1 | 98.1° | 2 |
| 1:80 | 3 | 86.6° | 7 |
| 1:2000 | 2 | 71.4° | — |
The trend is monotonic: 108° → 98° → 87° → 71°. The equal-mass angle reflects Thomson-like packing on the shape sphere. As mass ratio increases, the heavy-particle scaffold increasingly constrains light-particle geometry, compressing bond angles. The question for further work is whether specific mass ratios select for angles that match known molecular geometries — and if so, whether that is coincidence (shared packing geometry) or something deeper (the shape potential encoding chemical structure through ratios alone).
What happens when we run 500 independent minimisations of VS for the same (N, mass ratio) and keep every result? Each start lands in a local minimum. How many distinct minima exist? How do they differ?
For mass ratios below 1:50, all 500 starts converge to the same minimum — the shape potential has a single basin. At 1:50 and above, two distinct minima appear. The landscape topology changes with mass ratio.
This is not a numerical artifact. The two minima have measurably different VS values, different local structure, and different bond-angle distributions. The lower-VS minimum attracts the vast majority of starts (434–447 out of 500); the higher one is a rarer basin.
| Mass Ratio | Distinct Minima | Starts in Dominant | VS Gap |
|---|---|---|---|
| Equal | 1 | 500 / 500 | — |
| 1:2 | 1 | 500 / 500 | — |
| 1:5 | 1 | 500 / 500 | — |
| 1:10 | 1 | 500 / 500 | — |
| 1:50 | 2 | ~434 / 500 | 26,000 |
| 1:200 | 2 | ~447 / 500 | 982,000 |
| 1:2000 | 2 | ~447 / 500 | 700,000,000 |
For each bifurcated family, we show the two distinct configurations side by side. Left is the lower-VS (dominant) minimum, right is the higher-VS (rare) one. Both are PCA projections of 3D positions. Red = heavy particles, blue = light.
The key observation: the heavy-particle scaffold (red dots) is similar in both minima. What differs is how the light particles (blue dots) arrange themselves within that scaffold. This is the “fossil” idea — the scaffold is a structural trace that persists across the two basins. It is NOT a time sequence. It is two static configurations that share partial structure.


To quantify how much the two minima share, we compute three similarity scores between them:



Angle similarity is consistently high (0.85–0.90): the two minima have nearly identical local packing. Shape persistence is lower (0.50–0.63): the global arrangement differs. This is what we’d expect if the scaffold persists but the light-particle clusters rearrange.

Left: the mean nearest-neighbour bond angle at the dominant minimum, measured across all particles. It decreases monotonically: 108° (equal) to 71° (1:2000). At equal masses this is Thomson-like sphere packing (near the tetrahedral angle 109.5°). At high mass ratios, the heavy-particle scaffold compresses light-particle local geometry. Blue bars = single-basin families; red = bifurcated (2 minima).
Right: a composite structural score measuring how “non-trivial” each configuration is. It combines: asphericity (deviation from spherical shape), nearest-neighbour distance variation (uneven spacing = internal landmarks), cluster count (distinct sub-groups within the config), and low radial entropy (concentrated rather than uniform density). The score is not calibrated to any external standard — it ranks configurations relative to each other. Higher mass ratios produce more internally structured configurations.
A key concern (raised by Maria): for large mass ratios, do light particles simply freeze at their starting positions? We tested three deliberate initialisation strategies at 1:2000 and 1:80, 100 starts each:
All three strategies converge to the same dominant minimum with 85–92% of starts. The dominant VS values agree to 4+ decimal places. Mass preconditioning eliminates initialisation dependence.




At N=100 with 500 gradient-descent starts, we find at most 2 distinct minima per mass-ratio family. This is not enough for rich “age tracks” or “growth sequences.” To test whether longer sequences of partially-persistent configurations exist, we would need:
Face-like or household-object forms do not emerge from pure N-body at N=100. The strongest recurring motifs are mass-shell segregation and heavy-particle scaffolds.